PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.302760.1
Common NameCsa_5G155560, LOC101204373
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 253aa    MW: 26941.6 Da    PI: 4.9284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.302760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.8e-1686135155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  Cucsa.302760.1  86 SLYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTAEMAATAYDVAALALRG 135
                     579***9.55.6*********843...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-1986145IPR016177DNA-binding domain
CDDcd000185.97E-3086145No hitNo description
Gene3DG3DSA:3.30.730.102.7E-2787144IPR001471AP2/ERF domain
SMARTSM003808.0E-3087149IPR001471AP2/ERF domain
PROSITE profilePS5103220.54787143IPR001471AP2/ERF domain
PfamPF008471.7E-987135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MADQKTLPIN EGQIDQSLDH KSSSPISKPI PIDPFVSSSV PTPQNPNSKS QEQLPPPPPP  60
PPPPPSSLPS SIISPPPPSS TNKKHSLYRG IRCRSGKWVS EIREPRKTTR IWLGTFPTAE  120
MAATAYDVAA LALRGGDAVL NFPASIPTYP VPASTSPVDI RTAASTAAIA AAAKAVKKVS  180
STSSVDVGTM EDCSKKMRIE EFVDEEEIFG MPGLLADMAE GMMVSPPRMN SPPLSDDLME  240
NSDGTESLWS YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1488146363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143932.10.0PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9CAN95e-49ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A0A0KKC40.0A0A0A0KKC4_CUCSA; Uncharacterized protein
STRINGPOPTR_0003s12120.12e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-42ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]